ld2daps/Notebooks/Classification Scores-Copy1.ipynb

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 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Generic Classification Scores for DFC 2018 [TESTING]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "from sklearn import metrics\n",
    "import matplotlib.pyplot as plt\n",
    "import pandas as pd\n",
    "import triskele\n",
    "\n",
    "figsize = np.array((16, 9))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Load Classes Metadata"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "df_dfc_lbl  = pd.read_csv('../../minigrida/Data/ground_truth/labels.csv')\n",
    "df_meta_idx = pd.read_csv('../../minigrida/Data/ground_truth/jurse_meta_idx.csv')\n",
    "df_meta_lbl = pd.read_csv('../../minigrida/Data/ground_truth/jurse_meta_lbl.csv')\n",
    "\n",
    "df_dfc_lbl.merge(df_meta_idx).merge(df_meta_lbl)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "meta_idx = np.array(df_meta_idx['metaclass_index'], dtype=np.uint8)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Load Ground Truth and Prediction"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "gt = triskele.read('../Data/ground_truth/2018_IEEE_GRSS_DFC_GT_TR.tif')\n",
    "pred = triskele.read('../../minigrida/Enrichment/Results/tellus_fourhth_95bfcf.tif')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Display Classes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "fig, (ax_gt, ax_pred) = plt.subplots(2, figsize=figsize * 2)\n",
    "ax_gt.imshow(gt)\n",
    "ax_gt.set_title('Ground Truth')\n",
    "ax_pred.imshow(pred)\n",
    "ax_pred.set_title('Prediction')\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Display Meta Classes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "fig, (ax_gt, ax_pred) = plt.subplots(2, figsize=figsize * 2)\n",
    "ax_gt.imshow(meta_idx[gt])\n",
    "ax_gt.set_title('Ground Truth')\n",
    "ax_pred.imshow(pred)\n",
    "ax_pred.set_title('Prediction')\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Metrics\n",
    "\n",
    "### Classes\n",
    "\n",
    "#### Confusion"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "f = np.nonzero(pred)\n",
    "pred_s = pred[f].flatten()\n",
    "gt_s = gt[f].flatten()\n",
    "\n",
    "ct = pd.crosstab(gt_s, pred_s,\n",
    "        rownames=['Prediction'], colnames=['Reference'],\n",
    "        margins=True, margins_name='Total',\n",
    "        normalize=False # all, index, columns\n",
    "        )\n",
    "ct"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Scores\n",
    "\n",
    "##### Accuracy"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metrics.accuracy_score(gt_s, pred_s)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "##### Kappa"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metrics.cohen_kappa_score(gt_s, pred_s)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "##### Precision, Recall, f1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metrics.precision_recall_fscore_support(gt_s, pred_s)\n",
    "print(metrics.classification_report(gt_s, pred_s))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Meta Classes\n",
    "\n",
    "#### Confusion"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "f = np.nonzero(pred)\n",
    "m_pred_s = pred_s\n",
    "m_gt_s = meta_idx[gt_s]\n",
    "\n",
    "ct = pd.crosstab(m_gt_s, m_pred_s,\n",
    "        rownames=['Prediction'], colnames=['Reference'],\n",
    "        margins=True, margins_name='Total',\n",
    "        normalize=False # all, index, columns, False\n",
    "        )\n",
    "ct"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "lbl = df_meta_lbl['metaclass_label'][ct.columns[:-1]].tolist()\n",
    "lbl.append('Total')\n",
    "ct.columns = lbl\n",
    "ct.columns.name = 'Reference'\n",
    "ct.index = lbl\n",
    "ct.index.name = 'Reference'\n",
    "ct"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Scores\n",
    "\n",
    "##### Accuracy"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metrics.accuracy_score(m_gt_s, m_pred_s)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "##### Kappa"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metrics.cohen_kappa_score(m_gt_s, m_pred_s)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "##### Precision, Recall, f1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metrics.precision_recall_fscore_support(m_gt_s, m_pred_s)\n",
    "print(metrics.classification_report(m_gt_s, m_pred_s))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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