result_mockup.yml

@@ -7,13 +7,16 @@ detail: |
     générique. Il faut ajouter le chargement dynamique du protocole puis
     réusiner le fonctionnement du supervisor pour respecter l'esprit universel
     de minigrida.
-protocol: Jurse
+protocol: 
+    name: Jurse
+    package: protocols.jurse
 expe:
   ground_truth: 
     raster: ./Data/ground_truth/2018_IEEE_GRSS_DFC_GT_TR.tif
-    meta_labels: GT/jurse_idx.csv
+    meta_labels: ./Data/ground_truth/jurse_idx.csv
   descriptors_script:
-    name: Descriptors.dfc_aps
+    name: dfc_aps
+    package: descriptors
     parameters:
       areas:
       - 100
@@ -26,23 +29,25 @@ expe:
       - ./Data/phase1_rasters/DEM_C123_3msr/UH17_GEG051_TR.tif
       treshold: 1e4
   cross_validation:
-    name: CrossValidationGenerator.APsCVG
+    name: APsCVG
+    package: CVGenerators
     parameters:
       n_test: 2
   classifier:
-    name: sklearn.ensemble.RandomForestClassifier
+    name: RandomForestClassifier
+    package: sklearn.ensemble
     parameters:
       min_samples_leaf: 10
       n_estimators: 50
       n_jobs: -1
       random_state: 0
-expe_hashes:
+hashes:
   ground_truth: 2c5ecaddcb8c4a1c8863bc65e7440de4a1b4962c
   descriptors_script: cfdcc84d9d9c47177930257f286d850db446812b
   cross_validation: 4a61b34fda812fe717890b25d75430023335a7a6
   classifier: 40e6741ef8cc4b4fbe188b8ca0563eb5195b88ad
   global: b8219fab322bf11ec1aac14a1f51466dd94ddbdd
-expe_report:
+report:
   supervisor: thecomedian
   start_date: Le 27/07/2018 à 16:28:52
   end_date: Le 27/07/2018 à 16:29:54
@@ -52,10 +57,10 @@ expe_report:
       description: 0.6744262149950373
       classification: 168.82905034400028
       metrics: 1.1557443889978458
-expe_results:
+results:
-  classification: test_b8219f.tif
+  classification: ./Enrichment/Results/test_b8219f.tif
-  dimensions: 42
+  metrics:
-  scores:
+    dimensions: 42
     overall_accuracy: 0.5550408093111998
     cohen_kappa: 0.41714275852261407
 

supervisor.py

@@ -53,7 +53,7 @@ def update_queue():
     tmp_queue = list()
     for child in TEST_DIR.iterdir():
         if child.is_file() and child.suffix == '.yml':
-            tmp_queue.append({'expe_file': child,
+            tmp_queue.append({'expe_file': ExpePath(child),
                               'priority': get_priority(child)})
 
     queue = sorted(tmp_queue, key=itemgetter('priority'))
@@ -67,30 +67,56 @@ def get_priority(yml_file):
 
 
 def run(expe_file):
+    start_time = time.time()
     log.info('Run test {}'.format(expe_file))
-    with open(expe_file) as f:
+    test = expe_file.read()
-        test = OrderedDict(yaml.safe_load(f))
-
-
 
     ### Stage test
+    expe_file.stage(test)
 
     ### Load protocol
-    protocol = getattr(importlib.import_module('protocols.jurse'), test['protocol'])
+    try:
-    experience = protocol(test['expe'])
+        protocol = getattr(importlib.import_module(test['protocol']['package']),
+                           test['protocol']['name'])
+        experience = protocol(test['expe'])
+    except Exception as e:
+        err = 'Could not load protocol from test {}'.format(expe_file)
+        log.warning(err)
+        expe_file.error(test, 'loading protocol', e)
+        raise TestError(err)
     log.info('{} test protocol loaded'.format(experience))
 
     ### Write hahes
-    hashes = experience.get_hashes()
+    test['hashes'] = experience.get_hashes()
-    log.info(hashes)
+    test['report'] = create_report(start_time)
+    expe_file.stage(test)
 
     ### Run test
+    try:
+        experience.run()
+    except Exception as e:
+        err = 'Experience error'
+        log.warning(err)
+        expe_file.error(test, 'testing', e)
+        raise TestError(err) 
 
-    ### Write report
+    end_time = time.time()
+
+    ### Write complete report
+    report = create_report(start_time, end_time)
+    ressources = OrderedDict()
+    ressouces['ram'] = None
+    ressouces['proccess_time'] = experience.get_process_time()
+    report['ressources'] = ressouces
+    test['report'] = report
 
     ### Write results
+    test['results'] = experience.get_results()
+    expe_file.result(test)
+    log.info('Additional results in {}'.format(expe_file.get_result_path()))
 
     ### End of test
+    log.info('Test complete')
     return
     
     
@@ -149,20 +175,71 @@ def run(expe_file):
     (STAGING_DIR / oname_yml).unlink()
     write_expe_file(RESULT_DIR / oname_yml, expe, expe_hashes, expe_report, oname_tif, metrics)
 
-    log.info('Test complete')
+
+class ExpePath:
+    """Utility wrapper for expe files.
+
+    Extend pathlib Path with staging, result and errors function to move the
+    test report through the Enrichment center.
+
+    """
+    def __init__(self, path, hash_length=6):
+        self._actual = Path(path)
+        self._base_name = self._actual.stem
+        self._hash_length = hash_length
+        self._hash = None
+
+    def __str__(self):
+        return self._get_complete_name()
+
+    def read(self):
+        with open(self._actual) as f:
+            return OrderedDict(yaml.safe_load(f))
+
+    def _get_hash_name(self):
+        return '{}{}'.format(self._base_name,
+                '_' + self._hash[:self._hash_length] if self._hash is not None else '')
+
+    def _get_complete_name(self):
+        return self._get_hash_name() + '.yml'
+
+    def stage(self, expe):
+        log.info('Staging {}'.format(self._base_name))
+        self._check_hash(expe)
+        self._write(STAGING_DIR, expe)
+
+    def result(self, expe):
+        log.info('Write results for test {}'.format(self._base_name))
+        self._check_hash(expe)
+        self._write(RESULT_DIR, expe)
+
+    def error(self, expe, when='', e=Exception):
+        error = OrderedDict()
+        error['when'] = when
+        error['what'] = str(e)
+        error['where'] = traceback.format_exc()
+        expe['error'] = error
+        self._write(FAILED_DIR, expe)
+
+    def get_result_path(self):
+        return Path(RESULT_DIR) / self._get_hash_name()
+
+    def _check_hash(self, expe):
+        if self._hash is None:
+            if 'hashes' in expe:
+                self._hash = expe['hashes']['global']
+
+    def _write(self, path, expe):
+        new_path = Path(path) / self._get_complete_name()
+        with open(new_path, 'w') as of:
+            yaml.dump(expe, of, 
+                      default_flow_style=False, 
+                      encoding=None, 
+                      allow_unicode=True)
+        self._actual.unlink()
+        self._actual = new_path
     
     
-def write_error(file, expe, hashes=None, report=None, when='', e=Exception):
-    error = OrderedDict()
-    error['when'] = when
-    error['what'] = str(e)
-    error['where'] = traceback.format_exc()
-    with open(file, 'w') as of:
-        yaml.dump(OrderedDict({'expe': expe, 
-                   'expe_hashes': hashes, 
-                   'expe_report': report,
-                   'expe_error': error}),
-                  of, default_flow_style=False, encoding=None, allow_unicode=True)
 
 def write_expe_file(file, expe, hashes=None, report=None, classification=None, results=None):
     with open(file, 'w') as of:
@@ -186,18 +263,12 @@ def compute_hashes(expe):
     expe_hashes['global'] = glob.hexdigest()
     return expe_hashes
 
-def create_report(kronos):
+def create_report(stime=None, etime=None):
     expe_report = OrderedDict()
-
     expe_report['supervisor'] = os.uname()[1]
-
+    for datek, timev in zip(('start_date', 'end_date'), (stime, etime)):
-    for timev, datek in zip((kronos.get_start_date(), kronos.get_end_date()), ('start_date', 'end_date')):
         expe_report[datek] = datetime.datetime.fromtimestamp(timev).strftime('Le %d/%m/%Y à %H:%M:%S') if timev is not None else None
 
-    ressources = kronos.get_times()
-    ressources['ram'] = None
-
-    expe_report['ressources'] = ressources
     return expe_report
 
 def watch_folder():
@@ -205,6 +276,29 @@ def watch_folder():
     while not list(TEST_DIR.glob('*.yml')):
         time.sleep(10)
 
+class Kronos(object):
+    def __init__(self):
+        self._pt = time.process_time()
+        self._stime = time.time()
+        self._etime = None
+        
+    def time(self, name):
+        self._times[name + '_process_time'] = time.process_time() - self._pt
+        self._pt = time.process_time()
+        self._etime = time.time()
+        
+    def get_times(self):
+        return self._times
+    
+    def get_start_date(self):
+        return self._stime
+    
+    def get_end_date(self):
+        return self._etime
+
+    
+
+    
 def main():
     while(True):
         try:

test_mockup.yml

@@ -0,0 +1,43 @@
+name: Première expérience
+date: 9 juillet 2018
+priority: 1
+detail: |
+    Maquette pour la création du supervisor de minigrida.  Par rapport à la
+    version legacy du projet LD2DAPs, le choix du protocole de test est
+    générique. Il faut ajouter le chargement dynamique du protocole puis
+    réusiner le fonctionnement du supervisor pour respecter l'esprit universel
+    de minigrida.
+protocol: 
+    name: Jurse
+    package: protocols.jurse
+expe:
+  ground_truth: 
+    raster: ./Data/ground_truth/2018_IEEE_GRSS_DFC_GT_TR.tif
+    meta_labels: ./Data/ground_truth/jurse_idx.csv
+  descriptors_script:
+    name: dfc_aps
+    package: descriptors
+    parameters:
+      areas:
+      - 100
+      - 1000
+      moi:
+      - 0.5
+      - 0.9
+      rasters:
+      - ./Data/phase1_rasters/DEM+B_C123/UH17_GEM051_TR.tif
+      - ./Data/phase1_rasters/DEM_C123_3msr/UH17_GEG051_TR.tif
+      treshold: 1e4
+  cross_validation:
+    name: APsCVG
+    package: CVGenerators
+    parameters:
+      n_test: 2
+  classifier:
+    name: RandomForestClassifier
+    package: sklearn.ensemble
+    parameters:
+      min_samples_leaf: 10
+      n_estimators: 50
+      n_jobs: -1
+      random_state: 0