modifié : include/ArrayTree/ArrayTreeBuilder.hpp
modifié : include/ArrayTree/ArrayTreeBuilder.tpp modifié : include/Attributes/AreaAttributes.hpp modifié : include/Attributes/AreaAttributes.tpp modifié : include/Attributes/AverageAttributes.hpp modifié : include/Attributes/AverageAttributes.tpp modifié : include/Attributes/MoIAttributes.hpp modifié : include/Attributes/MoIAttributes.tpp modifié : include/Attributes/SDAttributes.hpp modifié : include/Attributes/SDAttributes.tpp modifié : include/Attributes/XYAttributes.hpp modifié : include/Attributes/XYAttributes.tpp modifié : include/CompAttribute.hpp modifié : include/CompAttribute.tpp modifié : include/IImage.hpp modifié : include/IImage.tpp modifié : include/Tree.hpp modifié : include/Tree.tpp modifié : src/Tree.cpp modifié : src/testMain.cpp
This commit is contained in:
Git Merciol
parent
675b87e17e
commit
3d46f792d6
@ -23,7 +23,7 @@ namespace otb {
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template <typename WeightT, typename PixelT>
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class ArrayTreeBuilder : public TreeBuilder {
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protected:
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const unsigned int coreCount;
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unsigned int coreCount;
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const Raster<PixelT> &raster;
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const GraphWalker &graphWalker;
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TreeType type;
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@ -35,8 +35,7 @@ namespace otb {
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DimImg *newCompId;
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WeightT *compWeights;
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public:
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inline ArrayTreeBuilder (const unsigned int &coreCount,
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Raster<PixelT> &raster, const GraphWalker &graphWalker,
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inline ArrayTreeBuilder (Raster<PixelT> &raster, const GraphWalker &graphWalker,
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const TreeType &treeType, const bool &countingSort = true);
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inline ~ArrayTreeBuilder ();
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@ -4,10 +4,9 @@
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// ========================================
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template<typename WeightT, typename PixelT>
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inline
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ArrayTreeBuilder<WeightT, PixelT>::ArrayTreeBuilder (const unsigned int &coreCount,
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Raster<PixelT> &raster, const GraphWalker &graphWalker,
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ArrayTreeBuilder<WeightT, PixelT>::ArrayTreeBuilder (Raster<PixelT> &raster, const GraphWalker &graphWalker,
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const TreeType &treeType, const bool &countingSort) :
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coreCount (coreCount),
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coreCount (boost::thread::hardware_concurrency ()),
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raster (raster),
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graphWalker (graphWalker),
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type (treeType),
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@ -83,8 +82,7 @@ template<typename WeightFunct>
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inline void
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ArrayTreeBuilder<WeightT, PixelT>::buildTree (Tree &tree, const WeightFunct &weightFunct) {
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DEF_LOG ("ArrayTreeBuilder::buildTree", "");
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//XXX initWeights (graphWalker, weightFunct);
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coreCount = tree.getCoreCount ();
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// buildParents
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vector<Edge<WeightT> > allEdges (graphWalker.edgeMaxCount ());
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@ -9,7 +9,7 @@ namespace otb {
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class AreaAttributes : public CompAttributeC<DimImg> {
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public:
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inline AreaAttributes (const Tree &tree, const unsigned int &treeCoreCount);
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inline AreaAttributes (const Tree &tree);
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inline ~AreaAttributes ();
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protected:
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inline void compute ();
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@ -2,8 +2,8 @@
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#define _OTB_TRISKELE_AREA_ATTRIBUTES_TPP
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inline
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AreaAttributes::AreaAttributes (const Tree &tree, const unsigned int &treeCoreCount)
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: CompAttributeC<DimImg> (tree, treeCoreCount) {
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AreaAttributes::AreaAttributes (const Tree &tree)
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: CompAttributeC<DimImg> (tree) {
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compute ();
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}
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@ -12,7 +12,7 @@ namespace otb {
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class AverageAttributes : public CompAttributeC<double> {
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public:
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template<typename PixelT>
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inline AverageAttributes (const Tree &tree, const Raster<PixelT> &raster, const AreaAttributes &areaAttributes, const unsigned int &treeCoreCount);
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inline AverageAttributes (const Tree &tree, const Raster<PixelT> &raster, const AreaAttributes &areaAttributes);
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inline ~AverageAttributes ();
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protected:
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template<typename PixelT>
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@ -3,8 +3,8 @@
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template<typename PixelT>
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inline
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AverageAttributes::AverageAttributes (const Tree &tree, const Raster<PixelT> &raster, const AreaAttributes &areaAttributes, const unsigned int &treeCoreCount)
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: CompAttributeC<double> (tree, treeCoreCount) {
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AverageAttributes::AverageAttributes (const Tree &tree, const Raster<PixelT> &raster, const AreaAttributes &areaAttributes)
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: CompAttributeC<double> (tree) {
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compute (raster, areaAttributes);
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}
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@ -9,7 +9,7 @@ namespace otb {
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class MoIAttributes : public CompAttributeC<double> {
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public:
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inline MoIAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const XYAttributes &xyAttributes, const unsigned int &treeCoreCount);
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inline MoIAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const XYAttributes &xyAttributes);
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inline ~MoIAttributes ();
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protected:
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inline void compute (const AreaAttributes &areaAttributes, const XYAttributes &xyAttributes);
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@ -2,8 +2,8 @@
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#define _OTB_TRISKELE_MOI_ATTRIBUTES_TPP
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inline
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MoIAttributes::MoIAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const XYAttributes &xyAttributes, const unsigned int &treeCoreCount)
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: CompAttributeC<double> (tree, treeCoreCount) {
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MoIAttributes::MoIAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const XYAttributes &xyAttributes)
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: CompAttributeC<double> (tree) {
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compute (areaAttributes, xyAttributes);
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}
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@ -10,7 +10,7 @@ namespace otb {
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class SDAttributes : public CompAttributeC<double> {
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public:
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inline SDAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const unsigned int &treeCoreCount);
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inline SDAttributes (const Tree &tree, const AreaAttributes &areaAttributes);
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inline ~SDAttributes ();
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protected:
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inline void compute (const AreaAttributes &areaAttributes);
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@ -2,8 +2,8 @@
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#define _OTB_TRISKELE_SD_ATTRIBUTES_TPP
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inline
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SDAttributes::SDAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const unsigned int &treeCoreCount)
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: CompAttributeC<double> (tree, treeCoreCount) {
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SDAttributes::SDAttributes (const Tree &tree, const AreaAttributes &areaAttributes)
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: CompAttributeC<double> (tree) {
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compute (areaAttributes);
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}
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@ -14,7 +14,7 @@ namespace otb {
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};
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class XYAttributes : public CompAttributeC<AverageXY> {
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public:
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inline XYAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const unsigned int &treeCoreCount);
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inline XYAttributes (const Tree &tree, const AreaAttributes &areaAttributes);
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inline ~XYAttributes ();
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protected:
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inline void compute (const AreaAttributes &areaAttributes);
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@ -2,8 +2,8 @@
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#define _OTB_TRISKELE_XY_ATTRIBUTES_TPP
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inline
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XYAttributes::XYAttributes (const Tree &tree, const AreaAttributes &areaAttributes, const unsigned int &treeCoreCount)
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: CompAttributeC<AverageXY> (tree, treeCoreCount) {
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XYAttributes::XYAttributes (const Tree &tree, const AreaAttributes &areaAttributes)
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: CompAttributeC<AverageXY> (tree) {
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compute (areaAttributes);
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}
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@ -48,7 +48,7 @@ namespace otb {
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template<typename AttrT>
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class CompAttributeC : public CompAttribute<AttrT> {
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public:
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inline CompAttributeC (const Tree &tree, const unsigned int &treeCoreCount);
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inline CompAttributeC (const Tree &tree);
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inline ~CompAttributeC ();
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template<typename PixelT>
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@ -60,8 +60,6 @@ namespace otb {
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const DimImg &pixelId, const AttrT &pixelAttrValue, const vector<const ThresholdsChanel<AttrT> > &selection);
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protected:
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const unsigned int treeCoreCount;
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template<typename CumpFunctPSE>
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inline void computeSameCompLevel (const CumpFunctPSE &cumpFunctPSE /* cumpFunctPSE (DimImg parentId)*/);
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};
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@ -66,9 +66,8 @@ CompAttribute<AttrT>::book (const DimImg &leafCount) {
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// ========================================
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template<typename AttrT>
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inline
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CompAttributeC<AttrT>::CompAttributeC (const Tree &tree, const unsigned int &treeCoreCount)
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: CompAttribute<AttrT> (tree),
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treeCoreCount (treeCoreCount) {
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CompAttributeC<AttrT>::CompAttributeC (const Tree &tree)
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: CompAttribute<AttrT> (tree) {
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}
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template<typename AttrT>
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@ -81,14 +80,15 @@ template<typename CumpFunctPSE>
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inline void
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CompAttributeC<AttrT>::computeSameCompLevel (const CumpFunctPSE &cumpFunctPSE) {
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const vector<DimImg> &weightBounds (CompAttribute<AttrT>::tree.getWeightBounds ());
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if (!weightBounds.size () || CompAttribute<AttrT>::tree.getCompCount ()/weightBounds.size () < treeCoreCount) {
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unsigned int coreCount = CompAttribute<AttrT>::tree.getCoreCount ();
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if (!weightBounds.size () || CompAttribute<AttrT>::tree.getCompCount ()/weightBounds.size () < coreCount) {
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CompAttribute<AttrT>::tree.forEachComp (cumpFunctPSE);
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return;
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}
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DimImg first = weightBounds [0];
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for (DimImg curBound = 1; curBound < weightBounds.size (); curBound++) {
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DimImg next = weightBounds [curBound];
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dealThreadRange (next-first, treeCoreCount, [this, &first, &cumpFunctPSE] (const DimImg &id) {
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dealThreadRange (next-first, coreCount, [this, &first, &cumpFunctPSE] (const DimImg &id) {
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const DimImg parentId = id+first;
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cumpFunctPSE (parentId);
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});
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@ -101,7 +101,7 @@ template<typename PixelT>
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inline void
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CompAttributeC<AttrT>::cut (vector<vector<PixelT> > allBands, const AttributeProfiles<PixelT> &attributeProfiles,
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const AttrT &pixelAttrValue, const vector<const ThresholdsChanel<AttrT> > &selection) {
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dealThreadRange (CompAttribute<AttrT>::leafCount, treeCoreCount, [this, &allBands, &attributeProfiles, &pixelAttrValue, &selection] (const DimImg &leafId) {
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dealThreadRange (CompAttribute<AttrT>::leafCount, CompAttribute<AttrT>::coreCount, [this, &allBands, &attributeProfiles, &pixelAttrValue, &selection] (const DimImg &leafId) {
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cutOnPos (allBands, attributeProfiles, leafId, pixelAttrValue, selection);
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});
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}
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@ -56,7 +56,7 @@ namespace triskele {
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template<typename PixelT>
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inline void readBand (Raster<PixelT> &raster, DimChanel band, const Point &cropOrig, const Size &cropSize) const;
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template<typename PixelT>
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inline void writeBand (Raster<PixelT> &raster, DimChanel band) const;
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inline void writeBand (PixelT *pixels, DimChanel band) const;
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private:
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IImage (const IImage &o) = delete;
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@ -131,12 +131,12 @@ IImage::readBand (Raster<PixelT> &raster, DimChanel band, const Point &cropOrig,
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template<typename PixelT>
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inline void
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IImage::writeBand (Raster<PixelT> &raster, DimChanel band) const {
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IImage::writeBand (PixelT *pixels, DimChanel band) const {
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DEF_LOG ("IImage::writeBand", "band: " << band);
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BOOST_ASSERT (gdalOutputDataset);
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band++; // !!! GDAL layers starts at 1 (not 0 :-( )
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GDALRasterBand &poBand = *gdalOutputDataset->GetRasterBand (band);
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CPLErr err = poBand.RasterIO (GF_Write, 0, 0, size.width, size.height, raster.getPixels (), size.width, size.height, dataType, 0, 0);
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CPLErr err = poBand.RasterIO (GF_Write, 0, 0, size.width, size.height, pixels, size.width, size.height, dataType, 0, 0);
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if (err != CE_None)
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cerr << "IImage::writeBand: can't acces " << fileName << endl;
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}
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@ -5,6 +5,7 @@
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#include <map>
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#include <string>
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#include <numeric>
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#include <boost/thread.hpp>
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#include "triskeleBase.hpp"
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#include "triskeleDebug.hpp"
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@ -26,6 +27,9 @@ namespace otb {
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inline DimNodeId *getChildCount ();
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protected:
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/*! nb core for build and compute attributes */
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const unsigned int coreCount;
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/*! Info about the picture */
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Size size;
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@ -56,8 +60,9 @@ namespace otb {
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public:
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// Constructors, destructor and resize method (does the same as the constructors)
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Tree (const DimSideImg &width, const DimSideImg &height);
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Tree ();
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// XXX test sans defaut treeCoreCount
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Tree (const DimSideImg &width, const DimSideImg &height, unsigned int coreCount = boost::thread::hardware_concurrency ());
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Tree (unsigned int coreCount = boost::thread::hardware_concurrency ());
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~Tree ();
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/*! clear values according to the size defined */
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@ -69,6 +74,8 @@ namespace otb {
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inline void setNodeCount (const DimImg &newNodeCount);
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inline void setSize (const Size &newSize);
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inline unsigned int getCoreCount () const;
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// Get the tree state and the size
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inline State getState () const;
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inline Size getSize () const;
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@ -2,6 +2,11 @@
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#define _OTB_TRISKELE_TREE_TPP
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// ========================================
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inline unsigned int
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Tree::getCoreCount () const {
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return coreCount;
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}
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inline DimNodeId *
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Tree::getChildCount () {
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return childCount;
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@ -3,14 +3,15 @@
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using namespace otb::triskele;
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using namespace std;
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Tree::Tree (const DimSideImg &width, const DimSideImg &height)
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: Tree ()
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Tree::Tree (const DimSideImg &width, const DimSideImg &height, unsigned int coreCount)
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: Tree (coreCount)
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{
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resize (width, height);
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}
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Tree::Tree ()
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Tree::Tree (unsigned int coreCount)
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: size (),
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coreCount (coreCount),
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leafCount (0),
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nodeCount (0),
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leafParents (nullptr),
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@ -32,39 +32,46 @@ using namespace otb::triskele::arrayTree;
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template<typename PixelT>
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inline
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void prog (const Option &option) {
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void prog (Option &option) {
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Raster<PixelT> raster;
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option.inputImage.readBand (raster, option.chanel, option.topLeft, option.size);
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Border border; // default = no border
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GraphWalker graphWalker (raster.getSize (), border);
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ArrayTreeBuilder<PixelT, PixelT> atb (option.treeCoreCount, raster, graphWalker, TreeType::MAX);
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Tree tree;
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ArrayTreeBuilder<PixelT, PixelT> atb (raster, graphWalker, TreeType::MAX);
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Tree tree (option.treeCoreCount);
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WeightAttributes<PixelT> weightAttributes (tree);
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atb.buildTree (tree, weightAttributes);
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weightAttributes.printValues ("weight");
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tree.printTree ();
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AttributeProfiles<PixelT> attributeProfiles (tree);
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atb.setAttributProfiles (attributeProfiles, raster);
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attributeProfiles.printValues ();
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AreaAttributes areaAttributes (tree, option.treeCoreCount);
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AreaAttributes areaAttributes (tree);
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areaAttributes.printValues ("area");
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AverageAttributes averageAttributes (tree, raster, areaAttributes, option.treeCoreCount);
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AverageAttributes averageAttributes (tree, raster, areaAttributes);
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averageAttributes.printValues ("average");
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SDAttributes sdAttributes (tree, areaAttributes, option.treeCoreCount);
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SDAttributes sdAttributes (tree, areaAttributes);
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sdAttributes.printValues ("sd");
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XYAttributes xyAttributes (tree, areaAttributes, option.treeCoreCount);
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XYAttributes xyAttributes (tree, areaAttributes);
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//xyAttributes.printValues ("XY"); // pb print de complexe
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MoIAttributes moiAttributes (tree, areaAttributes, xyAttributes, option.treeCoreCount);
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MoIAttributes moiAttributes (tree, areaAttributes, xyAttributes);
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moiAttributes.printValues ("moi");
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// XXX cut
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// XXX cut allProfiles.clear ();
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DimChanel nbBands = 1;
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vector <vector <PixelT> > allBands (tree.getLeafCount (), vector<PixelT> (nbBands, 0));
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// attribute.cut (out, attributProfiles, threshold)
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// XXX write
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tree.printTree ();
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option.outputImage.createImage (tree.getSize (), option.inputImage.getDataType (), nbBands);
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for (DimChanel c = 0; c < nbBands; ++c)
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option.outputImage.writeBand (&allBands[c][0], c);
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cerr << endl << "*** prog ok!" << endl;
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}
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