Commit Graph

916 Commits

Author SHA1 Message Date
george-gca
c98d596e2d Auto update markdown TOC 2025-05-12 19:46:12 +00:00
George
5878b5c71d
Update FAQ.md layout 2025-05-12 16:45:56 -03:00
George
58f4e02ab0
Changed order of params for gh-md-toc 2025-04-14 17:09:00 -03:00
George
78fdace28a
Update update-tocs.yml 2025-04-14 17:06:46 -03:00
George
c5bdfebd5b
Fixed tocs (#3133)
Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-04-14 17:02:59 -03:00
George
e4d5b06dbb
Using fork of gh-md-toc 2025-04-14 16:48:15 -03:00
george-gca
b963b565bb Auto update markdown TOC 2025-04-14 18:43:53 +00:00
George
cc140ddc41
Update FAQ.md 2025-04-14 15:43:34 -03:00
george-gca
dfe4091c1c Auto update markdown TOC 2025-04-14 18:40:13 +00:00
George
91a2b63c80
Created GitHub action to update TOCs (#3132)
Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-04-14 15:39:55 -03:00
Dian
15fad29f23
added my homepage (Dian Jiao). (#3128)
Hi!

I’m using the al-folio theme for my academic homepage and really
appreciate the work you’ve done — it’s clean, elegant, and super
helpful.

I’ve added my site (https://d-jiao.github.io) to the community list as
suggested. Thank you for maintaining this great project!

Best,
Dian Jiao (d-jiao)
2025-04-12 22:44:54 -03:00
Jos Zuijderwijk
d730fb3cb2
Added my website to the community pages. (#3119)
Thank you for this slick theme! I've added my customized page to the
community examples section. My implementation includes a few subtle
tweaks that might inspire others, just as I found inspiration from
existing community examples.
2025-04-10 14:16:38 -03:00
George
301132d2fd
Changed broken-links action to only run on main repo (#3118)
Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-04-09 11:41:26 -03:00
George
351dcb985e
Fixed liquid variables in some js files (#3117)
Fixes #3095

---------

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-04-09 11:36:16 -03:00
Thomas Kahle
fea4b7c550
Fix "comma and and" before last author in publication list (#3107) 2025-04-03 07:34:21 -07:00
George
f68e88c5ef
Added support for plotly js (#3097)
Only now I realized that the [previous
support](https://alshedivat.github.io/al-folio/blog/2021/distill/#interactive-plots)
for [plotly](https://plotly.com/) was enabled by exporting an HTML from
python code. This adds support for
[plotly.js](https://plotly.com/javascript/).

---------

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-03-26 17:16:03 -03:00
George
81b3c60f00
Updated dependencies (#3091)
Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-03-22 22:38:38 -03:00
Pranjal Aggarwal
a7b1f8c1b1
Re-add ability to exclude posts from search (#3089)
Earlier there was a tag in the `_config.yml` file to exclude the posts
from the search results. I could no longer find that option and hence
modified the `search.liquid.js` file.
It basically checks if the `posts_in_search` tag is true or not.
2025-03-22 22:11:34 -03:00
Nishanth Kumar
485e22fdf0
Add link to a new academic's website (#3075)
Love the theme and just used it for my own personal website! Thought I'd
link from here as suggested in the README to show my support! :)
2025-03-15 21:42:50 -03:00
Amir Pourmand
93aeb6d685
Update INSTALL.md (#3074)
Again, I saw this version problem with current version of our docker
image. Supposedly, there is some json package problem which I dealt
with.

But here is the overall solution to this problem for whoever is having
it.

---------

Co-authored-by: George <31376482+george-gca@users.noreply.github.com>
2025-03-14 10:38:19 -03:00
Hoe Jiun Tian
1dc670b02e
Fix typo in CUSTOMIZE.md (#3070)
`excludes` should be `exclude`. `excludes` with `s` does not work with
`_config.yml`, which itself uses `exclude` and `include`.
2025-03-13 11:06:51 -03:00
dependabot[bot]
9e837d6d0e
Bump json from 2.10.1 to 2.10.2 (#3066)
Bumps [json](https://github.com/ruby/json) from 2.10.1 to 2.10.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/ruby/json/releases">json's
releases</a>.</em></p>
<blockquote>
<h2>v2.10.2</h2>
<h2>What's Changed</h2>
<ul>
<li>Fix a potential crash in the C extension parser.</li>
<li>Raise a ParserError on all incomplete unicode escape sequence. This
was the behavior until <code>2.10.0</code> unadvertently changed
it.</li>
<li>Ensure document snippets that are included in parser errors don't
include truncated multibyte characters.</li>
<li>Ensure parser error snippets are valid UTF-8.</li>
<li>Fix <code>JSON::GeneratorError#detailed_message</code> on Ruby &lt;
3.2</li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/ruby/json/compare/v2.10.1...v2.10.2">https://github.com/ruby/json/compare/v2.10.1...v2.10.2</a></p>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/ruby/json/blob/master/CHANGES.md">json's
changelog</a>.</em></p>
<blockquote>
<h3>2025-03-12 (2.10.2)</h3>
<ul>
<li>Fix a potential crash in the C extension parser.</li>
<li>Raise a ParserError on all incomplete unicode escape sequence. This
was the behavior until <code>2.10.0</code> unadvertently changed
it.</li>
<li>Ensure document snippets that are included in parser errors don't
include truncated multibyte characters.</li>
<li>Ensure parser error snippets are valid UTF-8.</li>
<li>Fix <code>JSON::GeneratorError#detailed_message</code> on Ruby &lt;
3.2</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="350c1fd154"><code>350c1fd</code></a>
Release 2.10.2</li>
<li><a
href="c56db31f80"><code>c56db31</code></a>
Merge commit from fork</li>
<li><a
href="cf242d89a0"><code>cf242d8</code></a>
Fix potential out of bound read in
<code>json_string_unescape</code>.</li>
<li><a
href="57911f1ecf"><code>57911f1</code></a>
Merge pull request <a
href="https://redirect.github.com/ruby/json/issues/762">#762</a> from
byroot/invalid-escape</li>
<li><a
href="7d0637b9e6"><code>7d0637b</code></a>
Raise a ParserError on all incomplete unicode escape sequence.</li>
<li><a
href="c079793b76"><code>c079793</code></a>
Avoid fast-path IO writes when IO has ext enc</li>
<li><a
href="ac30b69c06"><code>ac30b69</code></a>
Merge pull request <a
href="https://redirect.github.com/ruby/json/issues/757">#757</a> from
rahim/fix-generator-error-no-method-error</li>
<li><a
href="2e015ff839"><code>2e015ff</code></a>
Fix JSON::GeneratorError#detailed_message with Ruby &lt; 3.2</li>
<li><a
href="f3e113654f"><code>f3e1136</code></a>
Merge pull request <a
href="https://redirect.github.com/ruby/json/issues/756">#756</a> from
byroot/utf8-snippets</li>
<li><a
href="e144793b72"><code>e144793</code></a>
Ensure parser error snippets are valid UTF-8</li>
<li>Additional commits viewable in <a
href="https://github.com/ruby/json/compare/v2.10.1...v2.10.2">compare
view</a></li>
</ul>
</details>
<br />


[![Dependabot compatibility
score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=json&package-manager=bundler&previous-version=2.10.1&new-version=2.10.2)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores)

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2025-03-12 13:11:59 -03:00
George
afc34968a7
Fixed docs (#3059)
Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-03-11 12:09:51 -03:00
George
82b2ad388f
Fix scrollbar color (#3058)
Fixes #3055

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-03-11 11:42:08 -03:00
George
d53297f256
Fix zoom in bibliography images (#3057)
Fixes #2668

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-03-11 11:34:58 -03:00
Nikos Kontogeorgis
74beacb274
Refactor footer content (#3041)
Refactor footer content into a reusable variable for cleaner code
2025-03-01 21:47:22 -03:00
George
6625f2395a
Digital Bookshelf V2 (#2866)
Since I was annoyed at not being able to use
[jekyll-archives](https://github.com/jekyll/jekyll-archives) to create
an archive for the books, I decided to implement myself the
[jekyll-archives-v2](https://github.com/george-gca/jekyll-archives-v2)
that doesn't have this limitation.

Closes #923.

---------

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-02-28 13:57:36 -03:00
Dominik Fuchß
14aaf4726e
Re-Enable exclusions of jekyll minifier (#3038)
Resolve #3037

This PR just re-enable the old exclusions of jekyll-minifier to ensure
that the files aren't altered.
2025-02-27 21:26:29 -03:00
Stefan de Lange
6b00edc4a3
Fix typo in -> on (#3029)
Fixed a small typo in `post.liquid`.
2025-02-24 11:15:19 -03:00
dependabot[bot]
977872f01e
Bump nokogiri from 1.18.1 to 1.18.3 (#3026)
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.18.1
to 1.18.3.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/sparklemotion/nokogiri/releases">nokogiri's
releases</a>.</em></p>
<blockquote>
<h2>v1.18.3 / 2025-02-18</h2>
<h3>Security</h3>
<ul>
<li>[CRuby] Vendored libxml2 is updated to <a
href="https://gitlab.gnome.org/GNOME/libxml2/-/releases/v2.13.6">v2.13.6</a>
to address CVE-2025-24928 and CVE-2024-56171. See <a
href="https://github.com/sparklemotion/nokogiri/security/advisories/GHSA-vvfq-8hwr-qm4m">GHSA-vvfq-8hwr-qm4m</a>
for more information.</li>
</ul>
<!-- raw HTML omitted -->

<pre><code>cab20305133078a8f6b60cf96311b48319175038cc7772e5ec586ff624cb7838
nokogiri-1.18.3-aarch64-linux-gnu.gem
acb256bb3213a180b1ed84a49c06d5d4c6c1da26f33bc9681f1fece4dab09a79
nokogiri-1.18.3-aarch64-linux-musl.gem
ce088965cd424b8e752d82087dcf017069d55791f157098ed1f671d966857610
nokogiri-1.18.3-arm64-darwin.gem
37b73a55e0d1e8a058a24abb16868903e81cb4773049739c532b864f87236b1b
nokogiri-1.18.3-arm-linux-gnu.gem
09407970cd13736cf87e975fae69c13e1178bab0313d07b35580ee4dd3650793
nokogiri-1.18.3-arm-linux-musl.gem
6b9fc3b14fd0cedd21f6cad8cf565123ba7401e56b5d0aec180c23cdca28fd5a
nokogiri-1.18.3.gem
236078c5f80ffc3d49c223fa98933d970543455403f9d672ca0aa5a6178a84fe
nokogiri-1.18.3-java.gem
216be1cb454c4657fc64747e5ae32b2ab4015843183766f238e4f4a62fb1f6be
nokogiri-1.18.3-x64-mingw-ucrt.gem
d729406bb5a7b1bbe7ed3c0922336dd2c46085ed444d6de2a0a4c33950a4edea
nokogiri-1.18.3-x86_64-darwin.gem
3c7ad5cee39855ed9c746065f39b584b9fd2aaff61df02d0f85ba8d671bbe497
nokogiri-1.18.3-x86_64-linux-gnu.gem
8aaecc22c0e5f12dac613e15f9a04059c3ec859d6f98f493cc831bd88fe8e731
nokogiri-1.18.3-x86_64-linux-musl.gem
</code></pre>
<!-- raw HTML omitted -->
<h2>v1.18.2 / 2024-01-19</h2>
<h3>Fixed</h3>
<ul>
<li>When performing a CSS selector query, an XML document's root
namespace declarations should not be applied to wildcard selectors
(<code>&quot;*&quot;</code>). Fixes a bug introduced in v1.17.0. (<a
href="https://redirect.github.com/sparklemotion/nokogiri/issues/3411">#3411</a>)
<a
href="https://github.com/flavorjones"><code>@​flavorjones</code></a></li>
</ul>
<!-- raw HTML omitted -->

<pre><code>74e0f9a7487a30a2957f46c5113d58f836436b033c9906e0bc6fee9d8cdafabf
nokogiri-1.18.2-aarch64-linux-gnu.gem
99bcea596a80eaee99f2bae2596275641ea688262c1da32b4e90db6159e86477
nokogiri-1.18.2-aarch64-linux-musl.gem
8288ec7a296e2510ca9bd053c0c5989f11260f8c07bc3e9afbafa536f7077281
nokogiri-1.18.2-arm64-darwin.gem
6fb0246b69f2c589a69254e82bc2a40aa238c4f977fd7903e283341a92935729
nokogiri-1.18.2-arm-linux-gnu.gem
dcdd4d10ed2743f0d8c887825700c3a8506aea1aa415917ac50ccc01597c51a3
nokogiri-1.18.2-arm-linux-musl.gem
93791cfb33186fe077eb9e1b8a6855b5621e328f81f565334572fa398366f8bf
nokogiri-1.18.2.gem
eefdf9f0d6086173d3488cf7a736732ee13fb6674ef15643478c20502a67bf37
nokogiri-1.18.2-java.gem
894514572fa7503ce9210e51a7f8a9a35f34f154d6406cec1ac148c3ce1536a3
nokogiri-1.18.2-x64-mingw-ucrt.gem
7fca165e5ee87e9b6b3f1377180376afc0c8652ed2a3d761f472f0e3d3a1c651
nokogiri-1.18.2-x86_64-darwin.gem
9330ced4a976604865c2a76ce158e2bc608fa83999552e85a32ec06f85f427db
nokogiri-1.18.2-x86_64-linux-gnu.gem
1cd7786ed15c76958d6a8f9a864df6208fecd624c340eb4ed211fbea60328f02
nokogiri-1.18.2-x86_64-linux-musl.gem
</code></pre>
<!-- raw HTML omitted -->
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/sparklemotion/nokogiri/blob/v1.18.3/CHANGELOG.md">nokogiri's
changelog</a>.</em></p>
<blockquote>
<h2>v1.18.3 / 2025-02-18</h2>
<h3>Security</h3>
<ul>
<li>[CRuby] Vendored libxml2 is updated <a
href="https://gitlab.gnome.org/GNOME/libxml2/-/releases/v2.13.6">v2.13.6</a>
to address CVE-2025-24928 and CVE-2024-56171. Nokogiri's maintainers
believe these vulnerabilities do not affect users of Nokogiri, but we
advise upgrading at your earliest convenience anyway.</li>
</ul>
<h2>v1.18.2 / 2024-01-19</h2>
<h3>Fixed</h3>
<ul>
<li>When performing a CSS selector query, an XML document's root
namespace declarations should not be applied to wildcard selectors
(<code>&quot;*&quot;</code>). Fixes a bug introduced in v1.17.0. (<a
href="https://redirect.github.com/sparklemotion/nokogiri/issues/3411">#3411</a>)
<a
href="https://github.com/flavorjones"><code>@​flavorjones</code></a></li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="fd3ca2e22d"><code>fd3ca2e</code></a>
version bump to v1.18.3</li>
<li><a
href="a8c526adf1"><code>a8c526a</code></a>
dep: update libxml2 to v2.13.6 (<a
href="https://redirect.github.com/sparklemotion/nokogiri/issues/3437">#3437</a>)</li>
<li><a
href="0847cf8688"><code>0847cf8</code></a>
ci: tired of waiting for gnome mirrors</li>
<li><a
href="11945c82df"><code>11945c8</code></a>
dep: update libxml2 to v2.13.6</li>
<li><a
href="aa54fa5954"><code>aa54fa5</code></a>
version bump to v1.18.2</li>
<li><a
href="0fb5541c95"><code>0fb5541</code></a>
backport: fix(css-selector): default XML namespace should not be applied
to w...</li>
<li><a
href="8ef2e918e7"><code>8ef2e91</code></a>
ci: bump windows test images from &quot;head&quot; to
&quot;3.4&quot;</li>
<li><a
href="c10fd7a02e"><code>c10fd7a</code></a>
dev: so tired of psych not building on various things</li>
<li><a
href="8378749614"><code>8378749</code></a>
fix(css-selector): default XML namespace is not applied to wildcard</li>
<li><a
href="b112e18a48"><code>b112e18</code></a>
prefactor: restructure css-to-xpath tests</li>
<li>See full diff in <a
href="https://github.com/sparklemotion/nokogiri/compare/v1.18.1...v1.18.3">compare
view</a></li>
</ul>
</details>
<br />


[![Dependabot compatibility
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2025-02-19 10:07:41 -03:00
DreamSoul
9272d23124
make abbr color inside bibliography a variable (#3017)
Fix https://github.com/alshedivat/al-folio/issues/3012 (make abbr color
inside bibliography a variable)
2025-02-17 04:46:15 -08:00
George
854598e139
Moved comment in repo.liquid 2025-02-14 13:21:25 -03:00
George
cbe03ec301
Moved comment in repo_user.liquid 2025-02-14 13:21:18 -03:00
Jiaye Wu
7719863ea0
fix language-not-found issues on repo page with simplified and traditional Chinese (#3015)
The author of github-readme-stats uses the non-standard code "cn" for
simplified Chinese, see
[here](https://github.com/anuraghazra/github-readme-stats?tab=readme-ov-file#available-locales).
While for traditional Chinese the author only provides "zh-tw". The
github-readme-stats functions on repo page will break if the user sets
the site language to ALL variants of Chinese except for zh-tw. This hack
is to make all sub-variants of simplified Chinese fall back to "cn" and
all sub-variants of traditional Chinese fall back to "zh-tw".

This patch fixes the problem and has been tested locally & with GitHub
pages.
2025-02-14 13:16:39 -03:00
Jacob Austin
10d007a98c
Allows for standard Jekyll code highlighting with distill template (#3002)
As described in https://github.com/alshedivat/al-folio/issues/300,
standard Markdown code highlighting doesn't work in the Distill template
because it is clobbered by the Distill "Prism" syntax highlighting. This
PR will allow d-code tags (distill-specific code tags) to function with
the Distill syntax highlighter, but will default `highlight` and
Markdown code blocks to use the Jekyll/Rouge highlighter.

This PR also removes overrides.js, which is currently broken because
jquery isn't loaded.
2025-02-12 18:47:57 -03:00
George
e3f029dcd1
Added sass changes to trigger deploy action 2025-02-09 12:21:55 -03:00
Soumyaranjan Dash
beeff21ecd
Updated scripts for correctly using gtag. (#2962)
Implementation of Google tag ID to correctly getting tracked requires
further modification in addition to the one line script in the
`_includes/scripts.liquid` file as
```
<script async src="https://www.googletagmanager.com/gtag/js?id={{ site.google_analytics }}"></script>
  <script>
    window.dataLayer = window.dataLayer || [];
    function gtag() {
      dataLayer.push(arguments);
    }
    gtag('js', new Date());

    gtag('config', '{{ site.google_analytics }}');
  </script>
```

I have made the changes and tested it out on my personal webpage to
ensure the tracking in analytics dashboard.
2025-02-09 06:41:20 -08:00
George
caf9976175
Add link to set workflow permissions 2025-01-30 16:02:39 -03:00
Alexi Gladstone
16edfe9c8a
Add my website to readme under academics--alexiglad.github.io (#2987) 2025-01-28 14:08:15 -03:00
George
0b3f19dfb3
Moved specific information from config to about (#2985)
Moved news and latest posts related information from `_config.yml` to
`_about.md` page.

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-01-27 17:04:24 -03:00
Elara Liu
4f28b9b97a
fix: typo in file name gitattributes (#2972)
Just fix the file name's typo.
2025-01-26 18:38:56 -08:00
Juan Carlos Niebles
b50db2e713
fixed indexing of external posts (#2983)
This should fix several issues with indexing external posts, including
#1828.

In short, I found that the issue with indexing was that the index
builder was receiving 'empty' documents. To fix that, I'm setting the
document content to be the post content as retrieved from the rss feed
or the text extracted from the external page.

I've tested with various blog sources and it seems to be working as
expected now.
2025-01-26 18:35:13 -08:00
George
15fc779e7e
Fix external link svg size in related posts 2025-01-23 14:11:20 -03:00
George
8266accd93
Fix related external posts (#2980)
Fixes #2977

Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-01-23 14:05:32 -03:00
Maruan Al-Shedivat
d3402d0379 Bump license year to 2025 2025-01-18 22:16:45 -05:00
George
cb0926f837
Updated socials info in CUSTOMIZE.md 2025-01-18 14:17:14 -03:00
George
c5d0e92dbd
Update docker version on INSTALL.md 2025-01-15 23:14:50 -03:00
George
8d1ca80b00
Update docker version on docker-compose.yml 2025-01-15 23:14:16 -03:00
George
82611b4b6d
Updated dependencies for next release (#2958)
Signed-off-by: George Araújo <george.gcac@gmail.com>
2025-01-15 23:12:15 -03:00
Suraj Khamkar
da32034525
Fix issue causing no color inversion when rendering equations (#2956)
## Problem Description

When dark mode is enabled, inline math expressions rendered using
`$...$` in distill-style blog posts are displayed in black text. This
makes them difficult to read against the dark background. The issue
occurs because the default styles for MathJax-rendered content do not
account for dark mode and set the text color to black.

## Proposed Solution

This PR updates the MathJax setup to dynamically apply inline styles to
ensure the text color of MathJax-rendered content inherits the parent
container’s color. Specifically:
- Added a custom action in the _MathJax.options.renderActions_ section
to inject a CSS rule that sets _.mjx-container_ to inherit its color
from its parent element.
- Ensures that inline math expressions render correctly in both light
and dark modes without explicitly setting a fixed color.

## Changes Made
Modified the _mathjax-setup.js_ file to include:
- Custom inline styles injected via JavaScript for _.mjx-container_
elements.
- Explicit handling of _inlineMath_ delimiters to ensure consistency in
rendering.

## Testing and Validation
- Tested the fix in both light and dark modes to confirm that inline
math expressions render in the correct color.
- Verified that the changes do not introduce regressions in light mode
or affect block math expressions rendered using `$$...$$`.

## Impact
- Improves readability of inline math expressions in dark mode.
- Provides a consistent user experience for distill-style blog posts
across light and dark themes.
- Resolves #2915

Co-authored-by: Suraj Khamkar <surajk@atlanticpkg.com>
2025-01-15 23:11:44 -03:00