This pull request introduces several documentation improvements and adds comprehensive Copilot and agent instruction files to the al-folio repository. The most significant changes are the addition of repository-wide and path-specific Copilot instructions, updates to agent documentation to reference these instructions, and improvements to the documentation structure and clarity regarding file purposes and workflows. **Copilot and Agent Instruction Enhancements:** - Added a new `.github/copilot-instructions.md` file providing detailed, repository-wide setup, build, CI/CD, troubleshooting, and file format guidance for Copilot coding agents. - Introduced `.github/instructions/bibtex-bibliography.instructions.md` with specific instructions for editing and validating BibTeX files, including custom keywords, formatting rules, and integration with Jekyll-Scholar. - Updated agent documentation files (`customize.agent.md`, `docs.agent.md`) to reference the new Copilot instruction files and explain their purpose and usage for both repository-wide and path-specific scenarios. [[1]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L57-R65) [[2]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L107-R122) [[3]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L49-R51) [[4]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L106-R137) **Documentation Structure and Clarity Improvements:** - Clarified and reorganized the documentation file list in agent files, removing references to deprecated or merged files (e.g., `MAINTENANCE.md`, `ACCESSIBILITY.md`) and updating descriptions to reflect current usage. [[1]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L57-R65) [[2]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L21-R21) [[3]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L106-R137) - Enhanced documentation on the purpose and application of each documentation file, and added detailed explanations of Copilot instruction files and their role in project development. **Workflow and Validation Updates:** - Updated references and descriptions for GitHub Actions workflows in agent documentation to include the Copilot environment setup and clarify pre-commit and CI/CD requirements. [[1]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L57-R65) [[2]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L49-R51) - Corrected references for accessibility guidance, now directing users to `TROUBLESHOOTING.md` instead of the removed `ACCESSIBILITY.md`. These changes collectively improve the onboarding experience for both human contributors and AI agents, ensuring consistent adherence to project conventions and reducing errors. **References:** [[1]](diffhunk://#diff-227c2c26cb2ee0ce0f46a320fc48fbcbdf21801a57f59161b1d0861e8aad55f5R1-R253) [[2]](diffhunk://#diff-6fd2827fb8d9c2dd6dc973572201853487ecbbd1120b00425d4f1c21dfdcf35fR1-R174) [[3]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L57-R65) [[4]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L107-R122) [[5]](diffhunk://#diff-15864f2655921f50a97689076e3b8feba0da320463750845be6a76eb2e30bfe4L550-R562) [[6]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L21-R21) [[7]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L49-R51) [[8]](diffhunk://#diff-961a46180ce568ce43c20bf7129dc5e4926a9aa4e0d7bc19926ca5ee3ff95cd0L106-R137) --------- Signed-off-by: George Araújo <george.gcac@gmail.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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Liquid Templates Instructions
Liquid Template Basics
This al-folio repository uses Liquid templating extensively. When modifying .liquid files:
Key Directories
_includes/– Reusable template components (imported with{% include %})_layouts/– Page layout templates (specified in frontmatter withlayout: name)
Common Liquid Tags in al-folio
{% include filename.liquid %}– Includes template component{% for item in collection %}...{% endfor %}– Loops{% if condition %}...{% endif %}– Conditionals{{ variable }}– Output variable{% assign var = value %}– Assign variable{% capture %}...{% endcapture %}– Capture output to variable| date: format– Date filtering| where: "key", "value"– Collection filtering
Important al-folio Liquid Components
_includes/citation.liquid– Bibliography entry rendering_includes/distill_scripts.liquid– Distill.pub specific scripts_includes/footer.liquid– Site footer_includes/head.liquid– Page <head> section_includes/header.liquid– Site header/navigation_includes/projects.liquid– Project display_includes/scripts.liquid– Global scripts_includes/selected_papers.liquid– Featured publications display
Prettier Formatting for Liquid
Prettier with @shopify/prettier-plugin-liquid enforces formatting:
- Single quotes around strings in Liquid tags
- Consistent spacing
- Indentation with 2 spaces
- Run
npx prettier . --writebefore committing
Common Modification Patterns
Modifying Site Header/Navigation
- Edit
_includes/header.liquid - Add links to navigation array in
_config.yml(see yaml-configuration.instructions.md) - Test by viewing site in browser:
docker compose up→ http://localhost:8080
Adding a New Component Include
- Create new file in
_includes/mycomponent.liquid - Use Liquid syntax for conditionals, loops, and variable output
- Call it from templates:
{% include mycomponent.liquid %} - Test:
docker compose up
Adjusting Styling with Liquid
- Some SCSS variables can be controlled via Liquid logic
- Avoid mixing complex Liquid with CSS; keep templates focused
Validation Before Committing
Always run these checks:
-
Prettier format check:
npx prettier _includes/ _layouts/ --check npx prettier . --write # Fix formatting -
Build test:
docker compose down docker compose up # Wait 30 seconds, check for errors in output # No "Unknown tag" messages should appear -
Visual verification:
- Open http://localhost:8080
- Check that your changes rendered correctly
- Verify no broken layout or missing content
Trust These Instructions
When working with Liquid templates:
- Use
_includes/and_layouts/as reference for syntax patterns - Follow existing formatting in files (Prettier will enforce consistency)
- Always test locally before pushing (build must succeed)
- For configuration changes, see yaml-configuration.instructions.md
- Only search for additional details if error messages reference unfamiliar Liquid tags or Jekyll concepts